SNP Profiles of TSA 656 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CG	AT	AC	GG	CT	AC	CC	AA	CC	AA	GG	AG	AC	CC
1._TSA_656	CG	AT	AC	GG	CT	AC	CC	AA	CC	AA	GG	AG	AC	CC
2._GC-08-257-8-25	CG	AT	AC	GG	CT	AC	CC	AA	CC	AA	GG	AG	AC	CC
3._GC-08-257-8-25	CG	AT	AC	GG	CT	AC	CC	AA	CC	AA	GG	AG	AC	CC
4._GC-08-257-8-25	CG	AT	AC	GG	CT	AC	CC	AA	CC	AA	GG	AG	AC	CC
5._GC-08-257-8-25	CG	AT	AC	GG	CT	AC	CC	AA	CC	AA	GG	AG	AC	CC
6._TSA_656	CG	AT	AC	GG	CT	AC	CC	AA	CC	AA	GG	AG	AC	CC
7._TSA_656	CG	AT	AC	GG	CT	AC	CC	AA	CC	AA	GG	AG	AC	CC
8._TSA_656	CG	AT	AC	GG	CT	AC	CC	AA	CC	AA	GG	AG	AC	CC
9._GC-08-257-8-25	CG	AT	AC	GG	CT	AC	CC	AA	CC	AA	GG	AG	AC	CC
10._RUQ_1016	CG	AT	AC	GG	TT	CC	CC	AA	CT	AA	AG	AG	AA	CC
11._GC-08-257-8-25	CG	AT	AC	GG	CT	CC	CC	AA	CT	AA	AG	AG	AA	CC
12._GC-08-257-8-25	CG	AT	AC	GG	CT	CC	CC	AA	CT	AA	AG	AG	AA	CC
13._GC-08-257-8-25	CG	AT	AC	GG	CT	CC	CC	AA	CT	AA	AG	AG	AA	CC
14._GC-08-257-8-25	CG	AT	AC	GG	CT	CC	CC	AA	CT	AA	AG	AG	AA	CC
15._GC-08-257-8-25	CG	AT	AC	GG	CT	CC	CC	AA	CT	AA	AG	AG	AA	CC
16._TSA_656	CG	AT	AC	GG	CT	CC	CC	AA	CT	AA	AG	AG	AA	CC
17._TSA_656	CG	AT	AC	GG	CT	CC	CC	AA	CT	AA	AG	AG	AA	CC
18._TSA_656	CG	AT	AC	GG	CT	CC	CC	AA	CT	AA	AG	AG	AA	CC
19._TSA_656	CG	AT	AC	GG	CT	CC	CC	AA	CT	AA	AG	AG	AA	CC
20._TSA_656	CG	AT	AC	GG	CT	CC	CC	AA	CT	AA	AG	AG	AA	CC
21._RUQ_1016	_	_	AC	_	_	_	_	AA	_	_	_	_	AA	_
22._RUQ_1016	_	_	CC	GG	TT	CC	CC	AA	CT	AA	_	AG	AA	CC

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GT	CG	AC	TT	AG	GG	CG	CT	CT	CG	AT	CT	AA	CT
1._TSA_656	GT	CG	AC	TT	AG	GG	CG	CT	CT	CG	AT	CT	AA	CT
2._GC-08-257-8-25	GT	CG	AC	TT	AG	GG	CG	CT	CT	CG	AT	CT	AA	CT
3._GC-08-257-8-25	GT	CG	AC	TT	AG	GG	CG	CT	CT	CG	AT	CT	AA	CT
4._GC-08-257-8-25	GT	CG	AC	TT	AG	GG	CG	CT	CT	CG	AT	CT	AA	CT
5._GC-08-257-8-25	GT	CG	AC	TT	AG	GG	CG	CT	CT	CG	AT	CT	AA	CT
6._TSA_656	GT	CG	AC	TT	AG	GG	CG	CT	CT	CG	AT	CT	AA	CT
7._TSA_656	GT	CG	AC	TT	AG	GG	CG	CT	CT	CG	AT	CT	AA	CT
8._TSA_656	GT	CG	AC	TT	AG	GG	CG	CT	CT	CG	AT	CT	AA	CT
9._GC-08-257-8-25	GT	CG	AC	TT	AG	GG	CG	CT	CT	CG	AT	CT	AA	CT
10._RUQ_1016	GG	GG	CC	CT	AG	GG	CC	CT	CC	CG	AT	CT	AA	CT
11._GC-08-257-8-25	GT	GG	CC	CT	AA	GG	CC	TT	CC	CG	AT	CT	AA	CC
12._GC-08-257-8-25	GT	GG	CC	CT	AA	GG	CC	TT	CC	CG	AT	CT	AA	CC
13._GC-08-257-8-25	GT	GG	CC	CT	AA	GG	CC	TT	CC	CG	AT	CT	AA	CC
14._GC-08-257-8-25	GT	GG	CC	CT	AA	GG	CC	TT	CC	CG	AT	CT	AA	CC
15._GC-08-257-8-25	GT	GG	CC	CT	AA	GG	CC	TT	CC	CG	AT	CT	AA	CC
16._TSA_656	GT	GG	CC	CT	AA	GG	CC	TT	CC	CG	AT	CT	AA	CC
17._TSA_656	GT	GG	CC	CT	AA	GG	CC	TT	CC	CG	AT	CT	AA	CC
18._TSA_656	GT	GG	CC	CT	AA	GG	CC	TT	CC	CG	AT	CT	AA	CC
19._TSA_656	GT	GG	CC	CT	AA	GG	CC	TT	CC	CG	AT	CT	AA	CC
20._TSA_656	GT	GG	CC	CT	AA	GG	CC	TT	CC	CG	AT	CT	AA	CC
21._RUQ_1016	_	GG	CC	_	AG	GG	CC	_	_	_	_	_	AA	_
22._RUQ_1016	GG	GG	CC	CT	_	GG	CC	TT	_	_	_	_	AA	CC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AG	AA	CT	CT	GT	CT	AC	CT	CC	CC	AA	CT	X_X	X_X
1._TSA_656	AG	AA	CT	CT	GT	CT	AC	CT	CC	CC	AA	CT	X_X	X_X
2._GC-08-257-8-25	AG	AA	CT	CT	GT	CT	AC	CT	CC	CC	AA	CT	X_X	X_X
3._GC-08-257-8-25	AG	AA	CT	CT	GT	CT	AC	CT	CC	CC	AA	CT	X_X	X_X
4._GC-08-257-8-25	AG	AA	CT	CT	GT	CT	AC	CT	CC	CC	AA	CT	X_X	X_X
5._GC-08-257-8-25	AG	AA	CT	CT	GT	CT	AC	CT	CC	CC	AA	CT	X_X	X_X
6._TSA_656	AG	AA	CT	CT	GT	CT	AC	CT	CC	CC	AA	CT	X_X	X_X
7._TSA_656	AG	AA	CT	CT	GT	CT	AC	CT	CC	CC	AA	CT	X_X	X_X
8._TSA_656	AG	AA	CT	CT	GT	CT	AC	CT	CC	CC	AA	CT	X_X	X_X
9._GC-08-257-8-25	AG	AA	CT	CT	GT	CT	AC	CT	CC	CC	AA	CT	X_X	X_X
10._RUQ_1016	GG	AT	CC	CT	GT	CT	CC	CT	TT	CG	AG	CC	X_X	X_X
11._GC-08-257-8-25	GG	AT	CC	CT	GT	TT	CC	CT	CT	CG	AG	CC	X_X	X_X
12._GC-08-257-8-25	GG	AT	CC	CT	GT	TT	CC	CT	CT	CG	AG	CC	X_X	X_X
13._GC-08-257-8-25	GG	AT	CC	CT	GT	TT	CC	CT	CT	CG	AG	CC	X_X	X_X
14._GC-08-257-8-25	GG	AT	CC	CT	GT	TT	CC	CT	CT	CG	AG	CC	X_X	X_X
15._GC-08-257-8-25	GG	AT	CC	CT	GT	TT	CC	CT	CT	CG	AG	CC	X_X	X_X
16._TSA_656	GG	AT	CC	CT	GT	TT	CC	CT	CT	CG	AG	CC	X_X	X_X
17._TSA_656	GG	AT	CC	CT	GT	TT	CC	CT	CT	CG	AG	CC	X_X	X_X
18._TSA_656	GG	AT	CC	CT	GT	TT	CC	CT	CT	CG	AG	CC	X_X	X_X
19._TSA_656	GG	AT	CC	CT	GT	TT	CC	CT	CT	CG	AG	CC	X_X	X_X
20._TSA_656	GG	AT	CC	CT	GT	TT	CC	CT	CT	CG	AG	CC	X_X	X_X
21._RUQ_1016	GG	_	CC	_	GT	_	_	_	_	CG	_	_	X_X	X_X
22._RUQ_1016	_	_	_	_	GT	_	_	_	TT	CG	AA	_	X_X	X_X

Input profile: TSA_656

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8825 9

Dapeng Zhang, 2016

1._TSA_656

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8825 8

Dapeng Zhang, 2016

2._TSA_656 GC-08-257-8-25

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

3._TSA_656 GC-08-257-8-25

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

4._TSA_656 GC-08-257-8-25

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

5._TSA_656 GC-08-257-8-25

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

6._TSA_656

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8825 9

Dapeng Zhang, 2016

7._TSA_656

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8825 7

Dapeng Zhang, 2016

8._TSA_656

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8825 4

Dapeng Zhang, 2016

9._TSA_656 GC-08-257-8-25

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

10._TSA_656 RUQ_1016

75 %
40 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

11._TSA_656 GC-08-257-8-25

73.8 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

12._TSA_656 GC-08-257-8-25

73.8 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

13._TSA_656 GC-08-257-8-25

73.8 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

14._TSA_656 GC-08-257-8-25

73.8 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

15._TSA_656 GC-08-257-8-25

73.8 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

16._TSA_656

73.8 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8825 10

Dapeng Zhang, 2016

17._TSA_656

73.8 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8825 6

Dapeng Zhang, 2016

18._TSA_656

73.8 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8825 3

Dapeng Zhang, 2016

19._TSA_656

73.8 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8825 2

Dapeng Zhang, 2016

20._TSA_656

73.8 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8825 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

21._TSA_656 RUQ_1016

73.1 %
13 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

22._TSA_656 RUQ_1016

68.8 %
24 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP226	8	TcSNP230	9	TcSNP242	10	TcSNP372
11	TcSNP429	12	TcSNP469	13	TcSNP529	14	TcSNP534	15	TcSNP560
16	TcSNP577	17	TcSNP591	18	TcSNP619	19	TcSNP645	20	TcSNP723
21	TcSNP872	22	TcSNP891	23	TcSNP917	24	TcSNP929	25	TcSNP953
26	TcSNP994	27	TcSNP998	28	TcSNP1060	29	TcSNP1062	30	TcSNP1075
31	TcSNP1144	32	TcSNP1165	33	TcSNP1253	34	TcSNP1270	35	TcSNP1350
36	TcSNP1414	37	TcSNP1442	38	TcSNP1458	39	TcSNP1484	40	TcSNP1520